Saturday, May 21, 2011

More Reference Admixture Runs | Harappa Ancestry Project

In addition to the removals and changes in the previous set of runs, I removed the Onge, Great Andamanese and Kalash for this set.

The admixture results of this dataset are in a spreadsheet as usual and the bar chart is below.

K=10, 11, 12 are the ones with the lowest cross-validation error.

I wonder if anyone is going to mind my calling C2 at K=9 Pakistani instead of Balochistan/Caucasus? ;-)

I like K=12 here and K=12 or 13 in the previous run. So the question is which one of all these K runs with two different datasets should I use to replace the old reference I K=12 admixture runs?

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Source: http://www.harappadna.org/2011/05/more-reference-admixture-runs/

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